PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000937920
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 417aa    MW: 47219.9 Da    PI: 7.9396
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000937920genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-05158181123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y+C+ Cg+ ++++ +Lk+H +  H
  MDP0000937920 158 YVCGVCGRKCKTNLDLKKHFKQlH 181
                    9******************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10102.7E-778148IPR029060PIN domain-like
PROSITE profilePS5015710.679158186IPR007087Zinc finger, C2H2
PROSITE patternPS000280160181IPR007087Zinc finger, C2H2
CDDcd061673.35E-11170312No hitNo description
Gene3DG3DSA:3.40.50.10102.7E-7243311IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MKLLCNPIHT FPYKPFPSIS LHSSRSPFFH SKRALLPQPI IXTAATSTTR NCRRGVIKSS  60
ASSEIDMVQN KQGIYTPKQK KVVILWDLDN KPPRGXPYQA AMALKQLAQR FGEVVDASAY  120
ANRHAFVHLP QWVIEERRER KQLDILERKG VVTPPDPYVC GVCGRKCKTN LDLKKHFKQL  180
HERERQKKLN RMGSLKGKKR QRFKERFVSG NHKYNEAARS LMKPKVGYGL ASELRRAGVF  240
VKTVEDKPQA ADWALKRQMQ HSMSRGIDWL FLVSDDSDFS DMLRKAREAK LGTVVVGDMD  300
RALGRHADVW VPWIGVENGE VSEKDLVPRR RISEFFDGDE EENGDGLFSD FGFDGGSGLD  360
NVVDELVRSS QSGGLRISAF SEGELEGGDW VEDDSDSEEY LLDSENEDSD EEDGFF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.258270.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008357383.10.0PREDICTED: uncharacterized protein LOC103421127
TrEMBLM5XCQ90.0M5XCQ9_PRUPE; Uncharacterized protein
STRINGPOPTR_0014s02520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64413135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-166C2H2-like zinc finger protein